Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W _ __init__() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) (pyavs.preprocessing.composer.AVSComposer method) (pyavs.remote.client.AVSRemote method) (pyavs.remote.query.EpochQuery method) (pyavs.remote.store.S3Store method) (pyavs.scenes.objects.CocoObjectMasker method) (pyavs.scenes.objects.FixationObjectChecker method) (pyavs.scenes.objects.ObjectMaskMetadata method) (pyavs.scenes.transform_scene_annotations.AVSSceneAnnotationTransformer method) (pyavs.utils.derivatives.DerivativesManager method) (pyavs.utils.logging.temporary_log_level method) (pyavs.visualization.events_on_scene.EyeTrackingPlotter method) A add_cross_event_information() (in module pyavs) (in module pyavs.dataloader.eye) add_et_metadata_to_epochs() (pyavs.preprocessing.composer.AVSComposer method) add_file_handler() (pyavs.utils.logging.PyAVSLogger class method) add_fix_event_trigger() (in module pyavs) (in module pyavs.preprocessing.trigger.tools) add_fixation_sequence_position() (in module pyavs) (in module pyavs.dataloader.eye) (in module pyavs.pilot.dataloader) add_pupil_dilation_to_events() (in module pyavs.dataloader.eye) add_sample_scene_coordinates() (in module pyavs) (in module pyavs.pilot.dataloader) add_scene_coordinates() (in module pyavs.pilot.dataloader) add_scene_metadata_to_epochs() (pyavs.preprocessing.composer.AVSComposer method) align_et_to_meg() (in module pyavs) (in module pyavs.preprocessing.ica) align_et_to_meg_per_block() (in module pyavs.preprocessing.ica) analysis (pyavs.config.manager.ConfigManager property) apply_beamformer() (in module pyavs.source.reconstruction) apply_ica (pyavs.config.config.PyAVSConfig attribute) apply_ica() (in module pyavs) (in module pyavs.preprocessing.ica) apply_ica_to_blocks() (pyavs.preprocessing.composer.AVSComposer method) apply_ica_to_raws() (in module pyavs.preprocessing.ica) apply_lcmv_to_epochs() (in module pyavs.source.filters) apply_maxwell_filter() (in module pyavs) (in module pyavs.preprocessing.meg) apply_precomputed_ica() (in module pyavs) (in module pyavs.preprocessing.meg) apply_source_reconstruction() (in module pyavs) (in module pyavs.source.reconstruction) area (pyavs.scenes.objects.ObjectMaskMetadata attribute) atlas (pyavs.config.config.PyAVSConfig attribute) attach_scene_ids_to_samples() (in module pyavs) (in module pyavs.preprocessing.samples) AVSComposer (class in pyavs.preprocessing.composer) AVSRemote (class in pyavs.remote.client) AVSSceneAnnotationTransformer (class in pyavs.scenes.transform_scene_annotations) B batch_command() (in module pyavs.cli) bbox (pyavs.scenes.objects.ObjectMaskMetadata attribute) bem_conductivity (pyavs.config.config.PyAVSConfig attribute) blocks (pyavs.config.config.PyAVSConfig attribute) build_epochs_array() (in module pyavs.io.read) build_et_gaze_epochs_per_scene() (in module pyavs.preprocessing.ica) build_et_raw_from_samples() (in module pyavs) (in module pyavs.preprocessing.ica) build_meg_scene_epochs_with_et() (in module pyavs.preprocessing.ica) C cache_dir (pyavs.config.config.PyAVSConfig attribute) categorize_objects() (in module pyavs.scenes.objects) category_id (pyavs.scenes.objects.ObjectMaskMetadata attribute) category_name (pyavs.scenes.objects.ObjectMaskMetadata attribute) check_data_availability() (in module pyavs) check_data_command() (in module pyavs.cli) check_forward_model() (in module pyavs.source.forward) check_meg_data_integrity() (in module pyavs.dataloader.meg) cleanup_legacy_structure() (pyavs.utils.derivatives.DerivativesManager method) clear_cache() (pyavs.scenes.objects.FixationObjectChecker method) close() (pyavs.scenes.objects.CocoObjectMasker method) CocoObjectMasker (class in pyavs.scenes.objects) ColoredFormatter (class in pyavs.utils.logging) COLORS (pyavs.utils.logging.ColoredFormatter attribute) compressed_mask_key (pyavs.scenes.objects.ObjectMaskMetadata attribute) compression (pyavs.config.config.PyAVSConfig attribute) compute_beamformer_filters() (in module pyavs) (in module pyavs.source.reconstruction) compute_cross_session_data_covariance() (in module pyavs.source.filters) compute_empty_room_covariance() (in module pyavs.source.reconstruction) compute_eye_tracking_quality_metrics() (in module pyavs.preprocessing.eye) compute_ica() (in module pyavs) (in module pyavs.preprocessing.ica) compute_masks() (pyavs.scenes.objects.CocoObjectMasker method) compute_masks_for_image() (pyavs.scenes.objects.CocoObjectMasker method) compute_minimum_norm_estimate() (in module pyavs.source.reconstruction) compute_per_session_lcmv_filters() (in module pyavs.source.filters) compute_population_codes() (in module pyavs) (in module pyavs.source.reconstruction) compute_source_power() (in module pyavs.source.reconstruction) concatenate_meg_runs() (in module pyavs.dataloader.meg) concatenate_raws_per_session() (pyavs.preprocessing.composer.AVSComposer method) ConfigManager (class in pyavs.config.manager) configure() (in module pyavs) (pyavs.utils.logging.PyAVSLogger class method) configure_command() (in module pyavs.cli) configure_logging() (in module pyavs.utils.logging) convert_letter_to_session() (in module pyavs.utils.paths) convert_session_to_letter() (in module pyavs.utils.paths) coord_frame (pyavs.config.config.PyAVSConfig attribute) create_bem_model() (in module pyavs) (in module pyavs.source.forward) create_bem_solution() (in module pyavs.source.forward) create_bids_embeddings_path() (in module pyavs.scenes.embeddings) create_bids_filename() (pyavs.utils.derivatives.DerivativesManager method) create_bids_meg_filename() (in module pyavs.utils.derivatives) create_epochs_command() (in module pyavs.cli) create_et_event_epochs() (in module pyavs) (in module pyavs.preprocessing.alignment) create_fixation_crops() (in module pyavs.scenes.crops) create_forward_model() (in module pyavs) (in module pyavs.source.forward) create_mixed_source_space() (in module pyavs.source.spaces) create_object_based_crops() (in module pyavs.scenes.crops) create_source_space() (in module pyavs) (in module pyavs.source.forward) (in module pyavs.source.spaces) crop_resize() (in module pyavs.scenes.transform_scene_annotations) (pyavs.scenes.transform_scene_annotations.AVSSceneAnnotationTransformer method) D data (pyavs.config.manager.ConfigManager property) data_cov_method (pyavs.config.config.PyAVSConfig attribute) data_path (pyavs.config.config.PyAVSConfig attribute) (pyavs.remote.client.AVSRemote property) data_type (pyavs.config.config.PyAVSConfig attribute) default_target_size_and_ratio() (in module pyavs.scenes.transform_scene_annotations) depth (pyavs.config.config.PyAVSConfig attribute) derivatives_path (pyavs.config.config.PyAVSConfig attribute) DerivativesManager (class in pyavs.utils.derivatives) E empty_room_type (pyavs.config.config.PyAVSConfig attribute) encode_caption_dataframe() (in module pyavs.captions.embedding) encode_captions() (in module pyavs.captions.embedding) encode_mscoco_captions() (in module pyavs.captions.embedding) enrich_with_flickr_metadata() (in module pyavs.scenes.coco_licenses) EpochQuery (class in pyavs.remote.query) epochs() (pyavs.remote.client.AVSRemote method) event_type (pyavs.config.config.PyAVSConfig attribute) exclude_bad_channels (pyavs.config.config.PyAVSConfig attribute) exclude_bad_epochs (pyavs.config.config.PyAVSConfig attribute) extract_embeddings_from_crops() (in module pyavs.scenes.embeddings) extract_flickr_photo_id() (in module pyavs.scenes.coco_licenses) extract_from_coco_dir() (in module pyavs.scenes.coco_licenses) extract_licensed_images() (in module pyavs.scenes.coco_licenses) extract_pupil_epochs() (in module pyavs.dataloader.eye) extract_roi_data() (in module pyavs) (in module pyavs.source.reconstruction) extract_scene_onset_times_et() (in module pyavs.preprocessing.ica) extract_scene_onset_times_et_per_block() (in module pyavs.preprocessing.ica) extract_scene_onset_times_meg() (in module pyavs.preprocessing.ica) extract_scene_onset_times_meg_per_block() (in module pyavs.preprocessing.ica) extract_scene_regions() (in module pyavs.scenes.crops) EyeTrackingPlotter (class in pyavs.visualization.events_on_scene) F fetch() (pyavs.remote.store.S3Store method) fetch_flickr_metadata() (in module pyavs.scenes.coco_licenses) filter_meg() (in module pyavs) (in module pyavs.preprocessing.meg) filter_meg_data() (pyavs.preprocessing.composer.AVSComposer method) filter_params (pyavs.config.config.PyAVSConfig attribute) find_cardiac_components() (in module pyavs) (in module pyavs.preprocessing.ica) find_coco_annotations() (in module pyavs.captions.coco_loader) (in module pyavs.captions.load) find_configs_for_subject() (in module pyavs.io.config_io) find_events_in_raw() (pyavs.preprocessing.composer.AVSComposer method) find_eye_components_xy_correlation() (in module pyavs) (in module pyavs.preprocessing.ica) find_population_codes_files() (in module pyavs) (in module pyavs.io.read) FixationObjectChecker (class in pyavs.scenes.objects) format() (pyavs.utils.logging.ColoredFormatter method) forward_spacing (pyavs.config.config.PyAVSConfig attribute) from_dict() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) G generate_parameter_signature() (in module pyavs.utils.derivatives) (pyavs.utils.derivatives.DerivativesManager method) get_annotation_type() (in module pyavs.scenes.cocostuff_classes) get_available_models() (in module pyavs.captions.embedding) (in module pyavs.scenes.embeddings) get_avs_blocks() (in module pyavs) (in module pyavs.preprocessing.trigger.tools) get_avs_scene_ids() (in module pyavs.scenes.coco_licenses) get_bids_population_codes_path() (in module pyavs.utils.derivatives) get_bids_preprocessed_path() (in module pyavs.utils.derivatives) get_calibration_files() (in module pyavs.preprocessing.meg) get_class_id() (in module pyavs.scenes.cocostuff_classes) get_class_name() (in module pyavs.scenes.cocostuff_classes) get_coco_info() (in module pyavs.captions.coco_loader) get_composer_kwargs() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) get_config() (in module pyavs.config.manager) (in module pyavs.utils.config) get_data_path() (in module pyavs) (in module pyavs.utils.config) get_data_summary() (pyavs.preprocessing.composer.AVSComposer method) get_default_ecoset_path() (in module pyavs.scenes.embeddings) get_default_subjects_dir() (in module pyavs.utils.paths) get_derivatives_manager() (in module pyavs.utils.derivatives) get_derivatives_path() (in module pyavs.utils.paths) (pyavs.config.config.PyAVSConfig method) get_derivatives_root() (in module pyavs.utils.config) get_dirs() (in module pyavs.config.dirs) get_epochs() (in module pyavs) get_epochs_path() (pyavs.utils.derivatives.DerivativesManager method) get_et_annotations() (pyavs.preprocessing.composer.AVSComposer method) get_filter_kwargs() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) get_filter_string() (pyavs.config.config.PyAVSConfig method) get_filters_path() (pyavs.utils.derivatives.DerivativesManager method) get_fixated_objects() (in module pyavs) (in module pyavs.scenes.objects) (pyavs.scenes.objects.FixationObjectChecker method) get_glasser_roi_labels() (in module pyavs) (in module pyavs.source.spaces) get_glasser_rois() (in module pyavs.utils.paths) get_layout() (pyavs.config.config.PyAVSConfig method) get_logger() (in module pyavs.utils.logging) (pyavs.utils.logging.PyAVSLogger class method) get_max_blocks() (in module pyavs.utils.paths) get_meg_timestamp() (in module pyavs) (in module pyavs.preprocessing.trigger.tools) get_meg_trigger_dict() (in module pyavs) (in module pyavs.preprocessing.trigger.tools) get_meg_trigger_mapping() (in module pyavs) (in module pyavs.preprocessing.alignment) get_noise_covariance_path() (pyavs.utils.derivatives.DerivativesManager method) get_object_labels (pyavs.config.config.PyAVSConfig attribute) get_parameter_signature_dict() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) get_pixels_per_degree() (pyavs.config.config.PyAVSConfig method) get_population_codes_kwargs() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) get_population_codes_path() (pyavs.utils.derivatives.DerivativesManager method) get_preprocessed_path() (pyavs.utils.derivatives.DerivativesManager method) get_rescaled_scene_size() (pyavs.config.config.PyAVSConfig method) get_roi_labels() (in module pyavs) (in module pyavs.source.spaces) get_scene_metadata() (pyavs.scenes.objects.CocoObjectMasker method) get_scene_scaling_factor() (pyavs.config.config.PyAVSConfig method) get_sensor_rois() (pyavs.config.config.PyAVSConfig method) get_source_reconstruction_kwargs() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) get_source_reconstruction_path() (pyavs.utils.derivatives.DerivativesManager method) get_source_rois() (pyavs.config.config.PyAVSConfig method) get_subject_session_id() (in module pyavs.utils.paths) get_subjects_dir() (pyavs.config.config.PyAVSConfig method) get_summary() (in module pyavs.scenes.cocostuff_classes) get_supercategory_palette() (in module pyavs.scenes.objects) get_tfr_kwargs() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) get_trigger_epochs_metadata() (in module pyavs.preprocessing.trigger.tools) get_visual_system_params() (pyavs.config.config.PyAVSConfig method) H hemi (pyavs.config.config.PyAVSConfig attribute) I ica_exclusion_dir (pyavs.config.config.PyAVSConfig attribute) ica_params (pyavs.config.config.PyAVSConfig attribute) ica_solutions_dir (pyavs.config.config.PyAVSConfig attribute) input_image_size (pyavs.config.config.PyAVSConfig attribute) inspect_explog_columns() (in module pyavs.captions.load) interpolate_bad_channels (pyavs.config.config.PyAVSConfig attribute) interpolate_bad_channels() (in module pyavs.preprocessing.meg) is_stuff_class() (in module pyavs.scenes.cocostuff_classes) is_thing_class() (in module pyavs.scenes.cocostuff_classes) L lcmv_filter_filename() (in module pyavs.source.filters) list_available_configs() (in module pyavs.io.config_io) list_available_parameter_sets() (in module pyavs) (in module pyavs.io.read) load() (pyavs.config.manager.ConfigManager method) (pyavs.remote.query.EpochQuery method) load_anatomical() (in module pyavs) (in module pyavs.dataloader.loaders) (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_and_enrich_eye_events() (in module pyavs) (in module pyavs.dataloader.eye) load_and_preprocess() (in module pyavs) load_and_preprocess_eye_tracking() (in module pyavs) load_and_preprocess_meg_run() (in module pyavs) (in module pyavs.dataloader.meg) load_annotated_raw_h5() (in module pyavs.io.read) load_bad_channels() (in module pyavs.preprocessing.meg) load_calibration_files() (in module pyavs.dataloader.loaders) load_captions() (in module pyavs.captions.load) load_captions_for_scenes() (in module pyavs.captions.load) load_captions_with_coco() (in module pyavs.captions.coco_loader) load_coco_captions_for_scenes() (in module pyavs.captions.load) load_coco_captions_from_annotations() (in module pyavs.captions.coco_loader) load_config() (in module pyavs.cli) (in module pyavs.config.manager) (in module pyavs.utils.config) load_config_from_population_codes() (in module pyavs.io.config_io) load_data_h5() (in module pyavs.io.read) load_empty_room() (in module pyavs.dataloader.loaders) load_empty_room_recording() (in module pyavs.dataloader.meg) load_epochs() (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_epochs_h5() (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_experiment_log() (in module pyavs) (in module pyavs.dataloader.loaders) (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_eye_events() (in module pyavs) (in module pyavs.dataloader.loaders) (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_eye_events_single() (in module pyavs.io.read) load_eye_samples() (in module pyavs.dataloader.loaders) load_forward_model() (in module pyavs) (in module pyavs.source.forward) load_ica() (in module pyavs.preprocessing.ica) load_mask_for_category() (pyavs.scenes.objects.CocoObjectMasker method) load_meg_data() (pyavs.preprocessing.composer.AVSComposer method) load_meg_events() (in module pyavs.dataloader.meg) load_meg_preprocessed() (in module pyavs) (in module pyavs.dataloader.meg) (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_meg_raw() (in module pyavs) (in module pyavs.dataloader.meg) (in module pyavs.io.read) (pyavs.remote.client.AVSRemote method) load_meg_session() (in module pyavs) (in module pyavs.dataloader.meg) load_metadata_csv() (in module pyavs.io.read) load_object_masks() (in module pyavs.scenes.objects) load_or_compute_lcmv_filters() (in module pyavs.source.filters) load_pilot_events() (in module pyavs) (in module pyavs.pilot.dataloader) load_pilot_samples() (in module pyavs) (in module pyavs.pilot.dataloader) load_population_codes() (in module pyavs.io.read) load_samples_with_scenes() (in module pyavs) (in module pyavs.preprocessing.samples) load_scene() (pyavs.visualization.events_on_scene.EyeTrackingPlotter method) load_scene_images() (in module pyavs.io.read) load_scenes() (in module pyavs) (in module pyavs.dataloader.loaders) (in module pyavs.io.read) load_source_data() (in module pyavs) (in module pyavs.io.read) load_source_space() (in module pyavs.source.spaces) log_processing_end() (in module pyavs.utils.logging) log_processing_start() (in module pyavs.utils.logging) loose (pyavs.config.config.PyAVSConfig attribute) M main() (in module pyavs.cli) (in module pyavs.scenes.coco_licenses) (in module pyavs.scenes.transform_scene_annotations) (in module pyavs.visualization.events_on_scene) make_et_event_epochs() (pyavs.preprocessing.composer.AVSComposer method) make_trigger_locked_epochs() (pyavs.preprocessing.composer.AVSComposer method) map_fixations_to_objects() (in module pyavs.scenes.objects) match_saccades_to_fixations() (in module pyavs.utils.eye_tracking) max_block (pyavs.config.config.PyAVSConfig attribute) method (pyavs.config.config.PyAVSConfig attribute) min_block (pyavs.config.config.PyAVSConfig attribute) mindist (pyavs.config.config.PyAVSConfig attribute) module pyavs.captions.coco_loader pyavs.captions.embedding pyavs.captions.load pyavs.cli pyavs.config.config pyavs.config.dirs pyavs.config.manager pyavs.dataloader.eye pyavs.dataloader.loaders pyavs.dataloader.meg pyavs.io.config_io pyavs.io.read pyavs.io.write pyavs.pilot.dataloader pyavs.preprocessing.alignment pyavs.preprocessing.eye pyavs.preprocessing.ica pyavs.preprocessing.meg pyavs.preprocessing.samples pyavs.preprocessing.trigger.tools pyavs.remote.client pyavs.remote.query pyavs.remote.store pyavs.scenes.coco_licenses pyavs.scenes.cocostuff_classes pyavs.scenes.crops pyavs.scenes.embeddings pyavs.scenes.objects pyavs.scenes.transform_scene_annotations pyavs.source.filters pyavs.source.forward pyavs.source.reconstruction pyavs.source.spaces pyavs.utils.config pyavs.utils.derivatives pyavs.utils.eye_tracking pyavs.utils.logging pyavs.utils.paths pyavs.utils.validation pyavs.visualization.events_on_scene pyavs.visualization.meg morph_source_space() (in module pyavs.source.spaces) N n_epochs_per_session (pyavs.config.config.PyAVSConfig attribute) n_jobs (pyavs.config.config.PyAVSConfig attribute) noise_cov_method (pyavs.config.config.PyAVSConfig attribute) O ObjectMaskMetadata (class in pyavs.scenes.objects) only_metadata (pyavs.config.config.PyAVSConfig attribute) open_remote() (in module pyavs.remote.client) output_format (pyavs.config.config.PyAVSConfig attribute) output_prefix (pyavs.config.config.PyAVSConfig attribute) P parse_mscoco_captions() (in module pyavs.captions.load) partition_random_epochs (pyavs.config.config.PyAVSConfig attribute) paths (pyavs.config.manager.ConfigManager property) pick_ori (pyavs.config.config.PyAVSConfig attribute) plot_evoked_joint() (in module pyavs) (in module pyavs.visualization.meg) plot_heatmap() (pyavs.visualization.events_on_scene.EyeTrackingPlotter method) plot_ica_components() (in module pyavs.preprocessing.ica) plot_ica_sources() (in module pyavs.preprocessing.ica) plot_median_erf() (in module pyavs) (in module pyavs.visualization.meg) plot_multi_subject_heatmap() (pyavs.visualization.events_on_scene.EyeTrackingPlotter method) plot_overview() (pyavs.visualization.events_on_scene.EyeTrackingPlotter method) plot_scene() (pyavs.visualization.events_on_scene.EyeTrackingPlotter method) plot_sensor_space_overview() (in module pyavs) (in module pyavs.visualization.meg) preload (pyavs.config.config.PyAVSConfig attribute) prepare_empty_room_recording() (in module pyavs.preprocessing.meg) preprocess_command() (in module pyavs.cli) preprocess_eye_events() (in module pyavs) (in module pyavs.preprocessing.eye) preprocess_meg_block() (in module pyavs) (in module pyavs.preprocessing.meg) processing (pyavs.config.manager.ConfigManager property) pyavs.captions.coco_loader module pyavs.captions.embedding module pyavs.captions.load module pyavs.cli module pyavs.config.config module pyavs.config.dirs module pyavs.config.manager module pyavs.dataloader.eye module pyavs.dataloader.loaders module pyavs.dataloader.meg module pyavs.io.config_io module pyavs.io.read module pyavs.io.write module pyavs.pilot.dataloader module pyavs.preprocessing.alignment module pyavs.preprocessing.eye module pyavs.preprocessing.ica module pyavs.preprocessing.meg module pyavs.preprocessing.samples module pyavs.preprocessing.trigger.tools module pyavs.remote.client module pyavs.remote.query module pyavs.remote.store module pyavs.scenes.coco_licenses module pyavs.scenes.cocostuff_classes module pyavs.scenes.crops module pyavs.scenes.embeddings module pyavs.scenes.objects module pyavs.scenes.transform_scene_annotations module pyavs.source.filters module pyavs.source.forward module pyavs.source.reconstruction module pyavs.source.spaces module pyavs.utils.config module pyavs.utils.derivatives module pyavs.utils.eye_tracking module pyavs.utils.logging module pyavs.utils.paths module pyavs.utils.validation module pyavs.visualization.events_on_scene module pyavs.visualization.meg module PyAVSConfig (class in pyavs.config.config) PyAVSLogger (class in pyavs.utils.logging) R random_seed (pyavs.config.config.PyAVSConfig attribute) rank (pyavs.config.config.PyAVSConfig attribute) read_meg_block() (pyavs.preprocessing.composer.AVSComposer method) read_meg_sessions() (pyavs.preprocessing.composer.AVSComposer method) recompute_cov (pyavs.config.config.PyAVSConfig attribute) recompute_filters (pyavs.config.config.PyAVSConfig attribute) recompute_meg_prepro (pyavs.config.config.PyAVSConfig attribute) reduce_rank (pyavs.config.config.PyAVSConfig attribute) reg (pyavs.config.config.PyAVSConfig attribute) RemoteFileNotFoundError remove_artifacts() (in module pyavs.preprocessing.eye) repair_meg_trigger_events() (in module pyavs) (in module pyavs.preprocessing.alignment) (in module pyavs.preprocessing.trigger.tools) reproduce_analysis_from_config() (in module pyavs.io.config_io) resample_freq (pyavs.config.config.PyAVSConfig attribute) resample_meg() (in module pyavs) (in module pyavs.preprocessing.meg) resample_meg_data() (pyavs.preprocessing.composer.AVSComposer method) rois (pyavs.config.config.PyAVSConfig attribute) run_ica_et_pipeline() (in module pyavs) (in module pyavs.preprocessing.ica) S S3Store (class in pyavs.remote.store) save() (pyavs.config.manager.ConfigManager method) save_annotated_raw() (in module pyavs) (in module pyavs.io.write) save_config() (in module pyavs.config.manager) (in module pyavs.utils.config) save_data_h5() (in module pyavs.io.write) save_epochs() (in module pyavs.io.write) save_et_scores() (in module pyavs.preprocessing.ica) save_filters (pyavs.config.config.PyAVSConfig attribute) save_forward_model() (in module pyavs.source.forward) save_ica() (in module pyavs.preprocessing.ica) save_ica_exclusions() (in module pyavs.preprocessing.ica) save_metadata (pyavs.config.config.PyAVSConfig attribute) save_metadata_csv() (in module pyavs.io.write) save_population_codes_h5() (in module pyavs) (in module pyavs.io.write) save_preprocessed_meg() (in module pyavs.dataloader.meg) save_random_epochs (pyavs.config.config.PyAVSConfig attribute) save_source_data() (in module pyavs) (in module pyavs.io.write) save_source_space() (in module pyavs.source.spaces) save_stcs (pyavs.config.config.PyAVSConfig attribute) save_times (pyavs.config.config.PyAVSConfig attribute) scene_id (pyavs.scenes.objects.ObjectMaskMetadata attribute) screen_size_degrees (pyavs.config.config.PyAVSConfig attribute) screen_size_pixels (pyavs.config.config.PyAVSConfig attribute) screen_usage (pyavs.config.config.PyAVSConfig attribute) sessions (pyavs.config.config.PyAVSConfig attribute) set_config() (in module pyavs.config.manager) set_data_path() (in module pyavs) (in module pyavs.utils.config) set_level() (pyavs.utils.logging.PyAVSLogger class method) set_log_level() (in module pyavs.utils.logging) setup_command() (in module pyavs.cli) setup_coregistration() (in module pyavs) (in module pyavs.source.forward) setup_data_directory() (in module pyavs) (in module pyavs.utils.config) setup_paths() (pyavs.config.config.PyAVSConfig method) setup_source_reconstruction() (in module pyavs.source.reconstruction) setup_volume_source_space() (in module pyavs.source.spaces) snr (pyavs.config.config.PyAVSConfig attribute) sort_objects_by_category() (in module pyavs.scenes.objects) source (pyavs.config.manager.ConfigManager property) source_reconstruction_command() (in module pyavs.cli) stimuli_dir (pyavs.config.config.PyAVSConfig attribute) subject_id (pyavs.config.config.PyAVSConfig attribute) subjects_dir (pyavs.config.config.PyAVSConfig attribute) T temporary_log_level (class in pyavs.utils.logging) tfr_params (pyavs.config.config.PyAVSConfig attribute) tmax (pyavs.config.config.PyAVSConfig attribute) tmin (pyavs.config.config.PyAVSConfig attribute) to_dict() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) transform_all_scenes() (pyavs.scenes.transform_scene_annotations.AVSSceneAnnotationTransformer method) transform_scene_annotations() (pyavs.scenes.transform_scene_annotations.AVSSceneAnnotationTransformer method) U update_config() (in module pyavs.utils.config) url_for() (pyavs.remote.store.S3Store method) use_cov (pyavs.config.config.PyAVSConfig attribute) use_precomputed_ica (pyavs.config.config.PyAVSConfig attribute) V validate() (pyavs.config.config.PyAVSConfig method) (pyavs.config.manager.ConfigManager method) validate_blocks() (in module pyavs.utils.validation) validate_data_integrity() (in module pyavs.utils.validation) validate_experiment_log() (in module pyavs.utils.validation) validate_eye_events_dataframe() (in module pyavs.utils.validation) validate_samples_scene_assignment() (in module pyavs) (in module pyavs.preprocessing.samples) validate_session() (in module pyavs.utils.validation) validate_subject_id() (in module pyavs.utils.validation) verbose (pyavs.config.config.PyAVSConfig attribute) visualize_fixations_on_scene() (in module pyavs.scenes.crops) W weight_norm (pyavs.config.config.PyAVSConfig attribute) where() (pyavs.remote.query.EpochQuery method) write_output (pyavs.config.config.PyAVSConfig attribute)