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pyAVS 1.0.0 documentation
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pyAVS 1.0.0 documentation

Getting Started

  • Installation
  • Dataset at a Glance
  • Quick Start Guide
  • Data Access

Dataset

  • Dataset Structure
  • Known Issues

Methods

  • Methods
    • Participants
    • Stimuli
    • MEG Acquisition
    • Eye Tracking
    • MEG Preprocessing
    • Fixation Object Labeling
    • Source Reconstruction
    • Semantic Captioning Task

Example Analyses

  • Example Analyses

Python Package

  • Python Package
    • AVSComposer Guide
    • Tutorials
      • MEG + Eye Tracking Workflow
      • Source Reconstruction and Population Codes
    • Examples
      • Source Reconstruction Examples
      • Cross-Session Beamformer Filters
      • Configuration System
      • COCO-Stuff Object Detection
      • Object Detection on Real Data
    • API Reference
      • pyavs.set_data_path
      • pyavs.get_data_path
      • pyavs.setup_data_directory
      • pyavs.configure
      • pyavs.check_data_availability
      • pyavs.load_eye_events
      • pyavs.load_experiment_log
      • pyavs.load_anatomical
      • pyavs.load_scenes
      • pyavs.load_and_enrich_eye_events
      • pyavs.add_fixation_sequence_position
      • pyavs.add_cross_event_information
      • pyavs.load_and_preprocess_eye_tracking
      • pyavs.load_meg_raw
      • pyavs.load_meg_preprocessed
      • pyavs.load_meg_session
      • pyavs.load_and_preprocess_meg_run
      • pyavs.get_fixated_objects
      • pyavs.preprocess_eye_events
      • pyavs.apply_maxwell_filter
      • pyavs.filter_meg
      • pyavs.resample_meg
      • pyavs.preprocess_meg_block
      • pyavs.apply_precomputed_ica
      • pyavs.compute_ica
      • pyavs.apply_ica
      • pyavs.find_cardiac_components
      • pyavs.find_eye_components_xy_correlation
      • pyavs.run_ica_et_pipeline
      • pyavs.build_et_raw_from_samples
      • pyavs.align_et_to_meg
      • pyavs.create_et_event_epochs
      • pyavs.get_meg_trigger_mapping
      • pyavs.repair_meg_trigger_events
      • pyavs.get_meg_trigger_dict
      • pyavs.get_avs_blocks
      • pyavs.get_meg_timestamp
      • pyavs.add_fix_event_trigger
      • pyavs.attach_scene_ids_to_samples
      • pyavs.load_samples_with_scenes
      • pyavs.validate_samples_scene_assignment
      • pyavs.create_forward_model
      • pyavs.create_bem_model
      • pyavs.setup_coregistration
      • pyavs.load_forward_model
      • pyavs.apply_source_reconstruction
      • pyavs.compute_beamformer_filters
      • pyavs.compute_population_codes
      • pyavs.extract_roi_data
      • pyavs.save_source_data
      • pyavs.save_annotated_raw
      • pyavs.save_population_codes_h5
      • pyavs.find_population_codes_files
      • pyavs.list_available_parameter_sets
      • pyavs.load_source_data
      • pyavs.create_source_space
      • pyavs.get_roi_labels
      • pyavs.get_glasser_roi_labels
      • pyavs.plot_evoked_joint
      • pyavs.plot_median_erf
      • pyavs.plot_sensor_space_overview
      • pyavs.load_pilot_events
      • pyavs.load_pilot_samples
      • pyavs.add_sample_scene_coordinates
      • pyavs.load_and_preprocess
      • pyavs.get_epochs
      • Data Loading (pyavs.dataloader)
      • Preprocessing (pyavs.preprocessing)
      • Source Reconstruction (pyavs.source)
      • Scene Analysis (pyavs.scenes)
      • Captions (pyavs.captions)
      • Utilities (pyavs.utils)
      • Configuration (pyavs.config)
      • Visualization (pyavs.visualization)
      • I/O (pyavs.io)
      • Pilot Data (pyavs.pilot)
      • Remote Access (pyavs.remote)
      • Command Line Interface (pyavs.cli)
  • Tutorials
    • MEG + Eye Tracking Workflow
    • Source Reconstruction and Population Codes
  • Examples
    • Source Reconstruction Examples
    • Cross-Session Beamformer Filters
    • Configuration System
    • COCO-Stuff Object Detection
    • Object Detection on Real Data
  • API Reference
    • pyavs.set_data_path
    • pyavs.get_data_path
    • pyavs.setup_data_directory
    • pyavs.configure
    • pyavs.check_data_availability
    • pyavs.load_eye_events
    • pyavs.load_experiment_log
    • pyavs.load_anatomical
    • pyavs.load_scenes
    • pyavs.load_and_enrich_eye_events
    • pyavs.add_fixation_sequence_position
    • pyavs.add_cross_event_information
    • pyavs.load_and_preprocess_eye_tracking
    • pyavs.load_meg_raw
    • pyavs.load_meg_preprocessed
    • pyavs.load_meg_session
    • pyavs.load_and_preprocess_meg_run
    • pyavs.get_fixated_objects
    • pyavs.preprocess_eye_events
    • pyavs.apply_maxwell_filter
    • pyavs.filter_meg
    • pyavs.resample_meg
    • pyavs.preprocess_meg_block
    • pyavs.apply_precomputed_ica
    • pyavs.compute_ica
    • pyavs.apply_ica
    • pyavs.find_cardiac_components
    • pyavs.find_eye_components_xy_correlation
    • pyavs.run_ica_et_pipeline
    • pyavs.build_et_raw_from_samples
    • pyavs.align_et_to_meg
    • pyavs.create_et_event_epochs
    • pyavs.get_meg_trigger_mapping
    • pyavs.repair_meg_trigger_events
    • pyavs.get_meg_trigger_dict
    • pyavs.get_avs_blocks
    • pyavs.get_meg_timestamp
    • pyavs.add_fix_event_trigger
    • pyavs.attach_scene_ids_to_samples
    • pyavs.load_samples_with_scenes
    • pyavs.validate_samples_scene_assignment
    • pyavs.create_forward_model
    • pyavs.create_bem_model
    • pyavs.setup_coregistration
    • pyavs.load_forward_model
    • pyavs.apply_source_reconstruction
    • pyavs.compute_beamformer_filters
    • pyavs.compute_population_codes
    • pyavs.extract_roi_data
    • pyavs.save_source_data
    • pyavs.save_annotated_raw
    • pyavs.save_population_codes_h5
    • pyavs.find_population_codes_files
    • pyavs.list_available_parameter_sets
    • pyavs.load_source_data
    • pyavs.create_source_space
    • pyavs.get_roi_labels
    • pyavs.get_glasser_roi_labels
    • pyavs.plot_evoked_joint
    • pyavs.plot_median_erf
    • pyavs.plot_sensor_space_overview
    • pyavs.load_pilot_events
    • pyavs.load_pilot_samples
    • pyavs.add_sample_scene_coordinates
    • pyavs.load_and_preprocess
    • pyavs.get_epochs
    • Data Loading (pyavs.dataloader)
    • Preprocessing (pyavs.preprocessing)
    • Source Reconstruction (pyavs.source)
    • Scene Analysis (pyavs.scenes)
    • Captions (pyavs.captions)
    • Utilities (pyavs.utils)
    • Configuration (pyavs.config)
    • Visualization (pyavs.visualization)
    • I/O (pyavs.io)
    • Pilot Data (pyavs.pilot)
    • Remote Access (pyavs.remote)
    • Command Line Interface (pyavs.cli)

Reference

  • Citation
  • Frequently Asked Questions
  • Terms of Use
  • Contributing to pyAVS
  • License
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